A note on fimo16 in TFutilsUpdated 9 days ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from fimo16.Rmd in TFutils 1.27.1.
ontoProc: Ontology interfaces for Bioconductor, with focus on cell type identificationUpdated 1 months ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ontoProc.Rmd in ontoProc 2.1.1.
owlents: using OWL directly in ontoProcUpdated 2 months ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from owlents.Rmd in ontoProc 2.1.1.
xenLite: exploration of a class for Xenium demonstration dataUpdated 2 months ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from xenLite.Rmd in xenLite 1.1.0.
Comparing totalVI and OSCA book CITE-seq analysesUpdated 10 months ago

OSCA book authors and Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from compch12.Rmd in scviR 1.7.0.
BiocSklearn -- exposing python Scikit machine learning elements for BioconductorUpdated 10 months ago

Vincent J. Carey, stvjc at channing.harvard.edu, Shweta Gopaulakrishnan, reshg at channing.harvard.edu, Samuela Pollack, spollack at jimmy.harvard.edu

Rendered from BiocSklearn.Rmd in BiocSklearn 1.29.0.
01 BiocHail -- GWAS tutorial from hail.isUpdated 1 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from gwas_tut.Rmd in BiocHail 1.7.1.
03 Working with UK Biobank summary statisticsUpdated 1 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ukbb.Rmd in BiocHail 1.7.1.
02 Working with larger VCF: T2T by chromosomeUpdated 1 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from large_t2t.Rmd in BiocHail 1.7.1.
pogos -- PharmacOGenomics Ontology SupportUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from pogos.Rmd in pogos 1.27.0.
scvi-tools CITE-seq tutorial in R, using serialized tutorial componentsUpdated 2 years ago

Follows scvi-tools doc, Gayoso, Steier et al. DOI 10.1038/s41592-020-01050-x

Rendered from citeseq_tut.Rmd in scviR 1.7.0.
scviR: an R package interfacing Bioconductor and scvi-toolsUpdated 2 years ago

Vince Carey stvjc at channing.harvard.edu

Rendered from scviR.Rmd in scviR 1.7.0.
Linking information between FHIR resourcesUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from D_linking.Rmd in BiocFHIR 1.9.0.
A machine learning tutorial tutorial: applications of the Bioconductor MLInterfaces package to gene expression dataUpdated 2 years ago

VJ Carey, P. Atieno

Rendered from MLprac2_2.Rmd in MLInterfaces 1.87.0.
MLInterfaces 2.0 -- a new designUpdated 2 years ago

VJ Carey, P. Atieno

Rendered from MLint_devel.Rmd in MLInterfaces 1.87.0.
Handling FHIR documents with BiocFHIRUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from B_handling.Rmd in BiocFHIR 1.9.0.
BiocFHIR -- infrastructure for parsing and analyzing FHIR dataUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from BiocFHIR.Rmd in BiocFHIR 1.9.0.
Transforming FHIR documents to tables with BiocFHIRUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from C_tables.Rmd in BiocFHIR 1.9.0.
Upper level FHIR conceptsUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from A_upper.Rmd in BiocFHIR 1.9.0.
gwascat: structuring and querying the NHGRI GWAS catalogUpdated 2 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from gwascat.Rmd in gwascat 2.39.0.
hmdbQuery: working with Human Metabolome Database (hmdb.ca)Updated 3 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from hmdbQuery.Rmd in hmdbQuery 1.27.0.
Software for reckoning AnVIL/Terra usageUpdated 3 years ago

BJ Stubbs, Vincent J. Carey, rebjh/stvjc at channing.harvard.edu

Rendered from billing.Rmd in AnVILBilling 1.17.0.
arrayMvout -- multivariate outlier algorithm for expression arraysUpdated 4 years ago

V. Carey

Rendered from arrayMvout.Rnw in arrayMvout 1.65.0.
parody: parametric and resistant outlier dytectionUpdated 4 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from parody.Rmd in parody 1.65.0.
parglms: fitting generalized linear and related models with parallel evaluation of contributions to sufficient statisticsUpdated 4 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from parglms.Rmd in parglms 1.39.0.
vtpnet: variant-transcription factor-network toolsUpdated 4 years ago

VJ Carey

Rendered from vtpnet.Rnw in vtpnet 0.47.0.
ldblock package: linkage disequilibrium data structuresUpdated 4 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ldblock.Rmd in ldblock 1.37.0.
GWAS catalog: Phenotypes systematized by the experimental factor ontologyUpdated 5 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from gwascatOnt.Rmd in gwascat 2.39.0.
affy contamination toolsUpdated 5 years ago

V. Carey

Rendered from affyContam.Rnw in affyContam 1.65.0.
Notes on ROC packageUpdated 5 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ROCnotes.Rmd in ROC 1.83.0.
tenXplore: ontology for scRNA-seq, applied to 10x 1.3 million neuronsUpdated 5 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from tenXplore.Rmd in tenXplore 1.29.0.
ssrch: selectize-based search engine for corpora of modest sizeUpdated 6 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ssrch.Rmd in ssrch 1.23.0.
TFutils: Data Structures for Transcription Factor BioinformaticsUpdated 6 years ago

BJ Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin Raby, Vincent Carey

Rendered from TFutils.Rmd in TFutils 1.27.1.
ivygapSE -- Bioconductor container for Ivy-GAP expression and metadataUpdated 7 years ago

Vincent J. Carey, stvjc at channing.harvard.edu

Rendered from ivygapSE.Rmd in ivygapSE 1.29.0.
RbcBook1 PrimerUpdated 11 years ago

Vince Carey

Rendered from RbcBook1.Rnw in RbcBook1 1.75.0.
pathRender overviewUpdated 11 years ago

Vince Carey

Rendered from pathRender.Rnw in pathRender 1.75.0.
pathway graphs colored by expression mapUpdated 11 years ago

Vince Carey

Rendered from plotExG.Rnw in pathRender 1.75.0.
MLInterfaces Computer ClusterUpdated 11 years ago

Vincent Carey

Rendered from xvalComputerClusters.Rnw in MLInterfaces 1.87.0.
keggorthology overviewUpdated 11 years ago

VJ Carey

Rendered from keggorth.Rnw in keggorthology 2.59.0.